university lille north of france LigASite database of binding sites
You can download the LigASite database in XML format:
Or, if you just want the XML Schema:
(XML files for individual proteins can be found at their respective pages)
Furthermore, we also provide the core data of LigASite in a comma-separated file. The format of this file is:
  • field 1: apo PDB ID
  • field 2: residue type and position of binding site residue
  • field 3: a hyphen-separated list of holo PDB ID's in which the residue is found in contact with a ligand.
Note that the XML files contain the detailed information describing all binding sites in the dataset (e.g. list of protein atoms in contact with HET-groups, list of HET-groups considered relevant, etc.).
The comma-separated version is created from the XML file.
Previous versions of LigASite are available for download here.
v5.0
August 2008
Interdisciplinary Research Institute, Computational Biology, Villeneuve d'Ascq, France
University College London, Biomolecular Structure and Modelling Unit, London, UK
Hospital for Sick Children and University of Toronto, Structural Biology and Biochemistry Program, Toronto, Canada
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