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LigASite database of binding sites |
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You can download the LigASite database in XML format: |
» Non-redundant version |
337 proteins |
3287566 bytes |
» Redundant version |
622 proteins |
8778490 bytes |
Or, if you just want the XML Schema: |
» XML Schema |
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9137 bytes |
(XML files for individual proteins can be found at their respective pages) |
Furthermore, we also provide the core data of LigASite in a comma-separated file. The format of this file is: |
- field 1: apo PDB ID
- field 2: residue type and position of binding site residue
- field 3: a hyphen-separated list of holo PDB ID's in which the residue is found in contact with a ligand.
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» LigASite comma-separated version |
622 proteins |
515079 bytes |
Note that the XML files contain the detailed information describing all binding sites in the dataset (e.g. list of protein atoms in contact with HET-groups, list of HET-groups considered relevant, etc.). The comma-separated version is created from the XML file. |
Previous versions of LigASite are available for download here. |
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v5.0 August 2008 |
Interdisciplinary Research Institute, Computational Biology, Villeneuve d'Ascq, France University College London, Biomolecular Structure and Modelling Unit, London, UK Hospital for Sick Children and University of Toronto, Structural Biology and Biochemistry Program, Toronto, Canada |
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